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Basic information

CohesinDB ID: CDBP00416789

Locus: chr21-31968074-31968890

Data sourse: ENCSR000BLD, GSE67783, GSE98367, GSE105028, GSE120943

Cell type: H1-hESC, Monocytes, HSPC, Macrophage, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 58%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, EZH2phosphoT487, ZSCAN5D, MYCN, ZFX, NME2, XBP1, ZBTB48, FOXA1, ZNF662, ERG3, DDX5, ERG2, SMARCC1, ERG, YY1, RELA, RAD21, SP140, NKX2-1, TAL1, MAF1, MAX, XRCC5, PRDM14, ZSCAN4, EZH2, ESR1, TP53, OCA2, CTCF, BAF155, KLF1, MNT, EGR1, ZNF410, BRD4, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): MIS18A,HUNK,SCAF4,AP000311.1,ITSN1,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 47

Number of somatic mutations (non-coding): 27

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000249209, ENSG00000205726,

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Deatailed information for cohesin site CDBP00416789