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Basic information

CohesinDB ID: CDBP00416790

Locus: chr21-31970770-31971371

Data sourse: GSE116344, GSE132649, GSE206145-NatGen2015

Cell type: T-47D, Fibroblast, RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 61%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GLIS1, FOXA2, ZNF496, NKX2-2, TOP2A, SS18, ZFX, XBP1, FOXA1, ZNF770, ZNF662, ERG3, HOXB13, SMARCC1, ERG, RELA, SMARCA4, SOX11, NKX3-1, ZNF143, DNMT3B, EZH2, ZNF334, RBM22, BCL11A, SPI1, BAF155, AR, ASH2L, CLOCK, HEXIM1-CDK9, PDX1

Target gene symbol (double-evidenced CRMs): ITSN1,AP000311.1,HUNK,TIAM1,SCAF4,MIS18A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000249209, ENSG00000205726,

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Deatailed information for cohesin site CDBP00416790