- Basic information
- CohesinDB ID: CDBP00416800
- Locus: chr21-31990202-31990791
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Data sourse: ENCSR703TNG, GSE25021, GSE67783, GSE72082
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Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 51%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, GLIS1, ZNF426, ZNF697, POU5F1, ZNF433, ZNF101, ZNF654, ZBTB21, ZBTB8A, ZFP64, ZNF510, RAD21, PRDM12, ZNF781, ZNF518A, ZNF189, ZNF10, ZNF639, ZNF629, ZXDB, ZNF558, ZBTB11, ZNF791, ZNF560, EZH2, ZNF680, ESR1, ZNF213, ZNF292, ZNF140, CTCF, ZNF577, ZNF664, REST, BRD4, ZNF528, ZNF623, ZC3H11A, ZNF555, ZNF34, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,MIS18A,HUNK,SYNJ1,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
- Related loop:
chr21:31850000-31875000~~chr21:31975000-32000000,
chr21:31975000-32000000~~chr21:32075000-32100000,
chr21:31975000-32000000~~chr21:32225000-32250000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32600000-32625000,
chr21:31991338-31992891~~chr21:32257485-32259289,
chr21:31991347-31993191~~chr21:32257436-32259286,
chr21:31991417-31992782~~chr21:32257395-32259361,
chr21:31991454-31992738~~chr21:32257485-32259262,
chr21:31991470-31992926~~chr21:32257476-32259450,
chr21:31991525-31992800~~chr21:32256274-32259275,