- Basic information
- CohesinDB ID: CDBP00416805
- Locus: chr21-32001051-32001696
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Data sourse: ENCSR167MTG, ENCSR000EEG, GSE67783, GSE72082, ENCSR000BLS, ENCSR054FKH, GSE25021
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Cell type: HSPC, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, FOXA1, RXRB, TFAP4, CDK2, ATF3, THAP1, MXD4, KLF5, ELF1, TEAD1, RBM39, KLF6, RCOR2, CTCF, EP300, MNT, SOX5, PAX8, E2F6, DMAP1, U2AF2, RFX3, TEAD4, FOXA3, GATAD2A, TFAP2C, RBPJ, MLX, BRD1, ZSCAN5D, MYCN, TOP2A, KDM4C, ZNF778, ZBTB48, ZSCAN5A, DUX4, GATAD1, SAP130, ARID3A, ZNF300, HNF4G, ETS1, SMARCA4, RFX1, HOMEZ, RAD21, GRHL3, XRCC5, ZNF614, PRDM14, MIER3, DNMT3B, HNRNPH1, NR2F6, CEBPB, CREB1, EZH2, EBF3, GABPB1, ZHX2, SPI1, TFE3, HDAC2, GATA2, ZNF644, MXD3, SIX2, DRAP1, MXI1, ZGPAT, NFIL3, ETV5, RUNX1, THAP11, MAFG, BCL6, CEBPA, EZH2phosphoT487, SIRT6, NKX2-2, SOX13, ZFX, SIN3A, TET2, ZNF770, SMARCC1, RARA, ZNF384, ZBTB2, CDK6, NRF1, ARNT, SMAD4, HMGXB4, TEAD3, SCRT2, U2AF1, KLF9, C11orf30, MBD1, ZNF22, RBM22, MAFK, USF1, SP1, HNF4A, IKZF5, ASH2L, FOXP1, STAG1, CBFA2T2, ZNF316, FOXA2, SS18, WT1, MAFF, TCF7, HOXB13, ZNF580, KDM1A, YY1, RELA, NEUROD1, ISL1, SP140, ZIC2, GATA3, MAX, ZNF143, AGO2, HAND2, PLAG1, CEBPG, ZNF334, NFKB1, MYOD1, PHOX2B, ELF3, KAT8, ARID4B, AR, BHLHE40, RXR, HSF1, ZBTB26, SCRT1, BRD4, CUX1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops