- Basic information
- CohesinDB ID: CDBP00416808
- Locus: chr21-32019740-32022472
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Data sourse: ENCSR000BTU, GSE206145-GSE177045, GSE67783, GSE111537, GSE72082, GSE86191, GSE98367, GSE116868, GSE206145-NatGen2015, GSE120943, GSE83726, GSE116344, GSE25021
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Cell type: MCF-7, Fibroblast, HCT-116, Monocytes, MB157, RH4, Ishikawa, OCI-AML-3, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 52%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF496, SOX2, FOXA1, SUZ12, TFAP4, ZNF90, ATF3, NFIC, MECOM, ZNF736, HDAC3, JMJD1C, TEAD1, TRIM28, ETV1, ZNF217, ESR1, MLL, PITX3, CTCF, TCF12, EP300, BAF155, LMO1, DPF2, TRIM24, PRKDC, E2F1, KMT2B, TFAP2C, RBPJ, NANOG, CHD8, ZSCAN5D, ZNF263, TOP2A, ZBTB48, STAT1, ERG, ASCL1, MYC, RAD21, GRHL3, RXRA, GABPA, STAT3, NKX3-1, GFI1, IKZF1, VDR, NR3C1, CEBPB, ESRRA, KMT2A, CREB1, EZH2, GRHL2, EBF3, TRPS1, GABPB1, SPI1, GATA2, FLI1, RUNX1, CTNNB1, SMC1A, CEBPA, EZH2phosphoT487, HDAC1, CRY1, SIN3A, ZFX, SMAD3, TET2, CREBBP, GR, ARNT, PRDM9, CDK8, MED1, MYB, PIAS1, KLF9, L3MBTL2, STAT5A, SP1, GSPT2, NR4A1, ASH2L, TCF3, FOXP1, STAG1, MTA3, CHD2, WT1, ZNF662, MEF2C, CDK9, HOXB13, KDM1A, RELA, NEUROD1, MCM3, SP140, ZIC2, HIF1A, OTX2, GATA3, MAX, NRIP1, ZNF143, SPIB, TLE3, CEBPG, NCOA3, NR2F2, TCF7L2, NR2F1, KDM5B, MYOD1, AR, RXR, EGLN2, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 17
- Related genes and loops