- Basic information
- CohesinDB ID: CDBP00416810
- Locus: chr21-32027404-32027780
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Data sourse: ENCSR000BTQ, ENCSR167MTG, GSE72082, ENCSR000BLS, GSE50893, ENCSR703TNG, GSE25021, GSE116344
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Cell type: MCF-7, GM2630, RH4, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYCN, RUNX1T1, SS18, ZFX, NME2, XBP1, WT1, ZSCAN5A, ZBTB48, DUX4, ZNF662, HOXB13, SMARCC1, YY1, RELA, ZNF90, MYC, EZH1, SMARCA4, RAD21, SP140, GRHL3, HIF1A, ZIC2, ARNT, ZNF736, ARNTL, MYB, ZNF544, EZH2, SAP30, TP53, NFKB1, EGR2, CTCF, SPI1, BCL11A, PAX8, GATA2, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops