- Basic information
- CohesinDB ID: CDBP00416814
- Locus: chr21-32038190-32038608
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, CHD8, POU2F2, CBX3, ZSCAN5D, TBL1X, TOP2A, MYCN, ZFX, XBP1, SMAD3, ZBTB48, DUX4, FOXA1, ZSCAN5A, TET2, WT1, PBX2, HOXB13, PRDM10, ERG, YY1, RELA, ASCL1, JUNB, ATF3, MYC, TRIP13, SP140, GRHL3, ARNT, ZFP36, ZNF322, OTX2, HIF1A, SMC3, GABPA, NFYA, DPF1, MAX, FOS, ZNF143, PLAG1, ARNTL, NR3C1, EZH2, LMO2, ESR1, PKNOX1, TP53, L3MBTL2, ZNF334, USF2, JUN, TCF12, USF1, BCL11A, CTCF, EP300, HNF4A, AR, SPI1, PAX8, RBM25, RAD51, NOTCH3, JUND, MAZ, NFYB, TFAP2C
- Target gene symbol (double-evidenced CRMs): EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops