- Basic information
- CohesinDB ID: CDBP00416818
- Locus: chr21-32054761-32055126
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Data sourse: ENCSR000BLD, GSE131606, GSE67783, GSE86191
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Cell type: H1-hESC, HCT-116, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, CRY1, KDM4C, ZFX, ZNF534, ZNF485, ERG2, ERG, RELA, ASCL1, NEUROD1, SMARCA4, GRHL3, ARNT, OTX2, TP63, HAND2, MYB, NEUROG2, EZH2, ZNF334, JUN, CTCF, BRD4, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops