- Basic information
- CohesinDB ID: CDBP00416821
- Locus: chr21-32065461-32066038
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Data sourse: GSE111537, GSE206145-NatGen2015
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Cell type: Fibroblast, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CEBPA, FOXA2, ZFX, XBP1, FOXA1, MEF2C, RELA, CHD7, RAD21, CDK8, MITF, PLAG1, VDR, KLF4, MYOG, JMJD1C, CEBPB, CEBPG, MYB, EZH2, ESR1, CTCF, USF1, SPI1, TRIM24, BRD4
- Target gene symbol (double-evidenced CRMs): MIS18A,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops