- Basic information
- CohesinDB ID: CDBP00416824
- Locus: chr21-32073717-32074345
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF426, ZNF697, SOX2, XBP1, ZNF101, FOXA1, SUZ12, ZFHX2, ATF3, BMI1, ZFP64, CHD7, PRDM12, CBFB, PAX5, TP63, ZSCAN4, ZNF629, RBM39, ETV1, LMO2, ESR1, PITX3, CTCF, TCF12, ZNF577, BAF155, EP300, GATA6, TEAD4, ZNF555, PDX1, TFAP2C, CHD8, MYCN, ZNF263, POU5F1, TOP2A, ZBTB17, DUX4, ZBTB48, STAT1, ZSCAN5A, ZNF433, DDX5, ERG2, TBP, ERG, OGG1, ZBTB8A, MYC, EZH1, SMARCA4, ONECUT1, RAD21, GRHL3, GABPA, STAT3, XRCC5, NKX3-1, RCOR1, ARNTL, NR3C1, CREB1, ZBTB11, EZH2, EBF3, SPI1, ZNF202, GATA2, MXD3, FLI1, MXI1, RUNX1, SMC1A, NKX2-2, SIRT6, EZH2phosphoT487, ZFX, SMAD3, ERG3, CBX8, TWIST1, ZNF384, ARNT, ZNF781, ZNF518A, ETV6, MED1, ZEB1, MYB, ZNF680, ZMYM3, PIAS1, SMAD1, USF1, ASH2L, HNRNPLL, FOXP1, AATF, ZNF623, SMC3, ZNF34, STAG1, NFATC3, ZNF394, TRP47, FOXA2, TBL1X, CHD2, WT1, HOXB13, KDM1A, YY1, RELA, TARDBP, ISL1, SP140, ZFP36, HIF1A, TCF4, GATA3, MAX, NRIP1, ZNF143, GATA1, HAND2, PLAG1, TLE3, ZFP69B, CBX2, NCOA3, NR2F1, TP53, ZNF334, ZSCAN22, EGR2, PHOX2B, ZNF140, ARRB1, PAX3-FOXO1, AR, RXR, MAML3, HEXIM1, EGR1, HSF1, RNF2, NOTCH3, BRD4, ILF3, CLOCK, MAZ
- Target gene symbol (double-evidenced CRMs): MIS18A,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000159055,
- Related loop:
chr21:31375000-31400000~~chr21:32075000-32100000,
chr21:31825000-31850000~~chr21:32075000-32100000,
chr21:31850000-31875000~~chr21:32050000-32075000,
chr21:31850000-31875000~~chr21:32075000-32100000,
chr21:31865190-31867889~~chr21:32075693-32077755,
chr21:31950000-31975000~~chr21:32075000-32100000,
chr21:31975000-32000000~~chr21:32075000-32100000,
chr21:32050000-32075000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32200000-32225000,
chr21:32075000-32100000~~chr21:32225000-32250000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32600000-32625000,