- Basic information
- CohesinDB ID: CDBP00416827
- Locus: chr21-32080346-32080864
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Data sourse: GSE116344, GSE120943, GSE98367
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Cell type: RH4, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX8, ZNF596
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A,CFAP298-TCP10L,CFAP298,SYNJ1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
- Related loop:
chr21:31375000-31400000~~chr21:32075000-32100000,
chr21:31825000-31850000~~chr21:32075000-32100000,
chr21:31850000-31875000~~chr21:32075000-32100000,
chr21:31865190-31867889~~chr21:32075693-32077755,
chr21:31950000-31975000~~chr21:32075000-32100000,
chr21:31975000-32000000~~chr21:32075000-32100000,
chr21:32075000-32100000~~chr21:32200000-32225000,
chr21:32075000-32100000~~chr21:32225000-32250000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32600000-32625000,