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Basic information

CohesinDB ID: CDBP00416828

Locus: chr21-32082220-32082966

Data sourse: GSE116344, ENCSR000EHX, ENCSR000BLY, GSE83726

Cell type: RH4, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 66% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 68%, "14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF660, NME2, PATZ1, FOXA1, ZFHX2, NFIC, ZBTB44, CHD7, MZF1, ESR1, PITX3, CTCF, TCF12, JUN, EP300, TEAD4, CHD8, BRD3, ZNF263, ZNF317, ZBTB17, ZBTB48, DDX5, TBP, ERG, OGG1, SMARCA4, RAD21, GRHL3, GABPA, STAT3, RCOR1, ARNTL, EZH2, FEZF1, EBF3, GATA2, SIX2, FLI1, MRTFB, ZNF554, EZH2phosphoT487, NKX2-2, ZFX, POU4F2, ERG3, TWIST1, PRDM10, ZNF35, OSR2, ZNF184, ZEB2, FOS, MED1, GSPT2, ZNF479, PRDM6, SMC3, FOXA2, CHD2, ZNF600, ZNF692, ZSCAN16, ZNF30, HOXB13, KDM1A, YY1, RELA, NEUROD1, JUNB, ISL1, HIF1A, OTX2, GATA3, ZNF143, GATA1, HAND2, ZNF334, NFKB1, MYOD1, PHOX2B, AR, PAX3-FOXO1, ZNF366, RNF2, NCOR1, BRD4, MAZ, TBX2, FOSL2

Target gene symbol (double-evidenced CRMs): CFAP298,HUNK,CFAP298-TCP10L,MIS18A,SYNJ1,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055, ENSG00000265590, ENSG00000159079, ENSG00000159082,

eachgene

Deatailed information for cohesin site CDBP00416828