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Basic information

CohesinDB ID: CDBP00416833

Locus: chr21-32093737-32094360

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 66% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 59%, "14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFYB, THAP11, CBFA2T2, NANOG, ZSCAN5D, MYCN, CREM, ID3, ZFX, TEAD4, ZBTB17, DUX4, PCBP2, ZBTB48, WT1, ZSCAN5A, ZNF770, ZNF574, SUZ12, HNRNPK, YY1, RELA, NFYC, ETS1, MYC, ATF3, RUNX2, SP140, GRHL3, ZNF611, HIF1A, RXRA, ATF2, GABPA, DPF1, STAT3, MAX, ZNF143, IKZF1, MITF, FOS, NR3C1, TEAD3, ELF1, TRIM28, TEAD1, CREB1, NFE2L2, KLF10, ZNF217, ESR1, OCA2, TP53, ZSCAN22, TBX5, USF2, GABPB1, CTCF, ELF3, USF1, ZNF507, SPI1, BRD2, PCBP1, ZNF479, SIX5, ZNF366, MXD3, ATF7, RFX5, HCFC1, RAD51, BRD4, MAZ, ZNF350, ZNF528, SMC3, STAG1, DMAP1

Target gene symbol (double-evidenced CRMs): HUNK,TIAM1,CFAP298,MIS18A,SYNJ1,CFAP298-TCP10L

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055, ENSG00000265590, ENSG00000159079, ENSG00000159082,

eachgene

Deatailed information for cohesin site CDBP00416833