- Basic information
- CohesinDB ID: CDBP00416841
- Locus: chr21-32122159-32122402
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Data sourse: ENCSR000BLD, GSE105028
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Cell type: H1-hESC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"9_Het": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, FOXA2, ZNF534, ZBTB48, FOXA1, ZNF662, ERG, MEF2A, YY1, MYC, RUNX3, PRDM1, ARNT, NKX2-1, MAX, ZNF143, MED1, ARNTL, NCOA3, EZH2, MLL, SETDB1, MYOD1, CTCF, SPI1, AR, GATA2, IRF4, SIX2, BRD4, KMT2B, MLLT1
- Target gene symbol (double-evidenced CRMs): MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops