- Basic information
- CohesinDB ID: CDBP00416851
- Locus: chr21-32150088-32150241
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Data sourse: ENCSR703TNG, GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, FOXA2, MYCN, ZFX, XBP1, GTF2B, FOXA1, ERG3, HOXB13, TWIST1, ERG, RELA, NEUROD1, MYC, SMARCA4, RAD21, GRHL3, GATA3, MAX, XRCC5, GATA1, ZNF143, HAND2, ZNF736, ARNTL, NCOA3, TERF1, CREB1, EZH2, OCA2, EBF3, BCL11A, AR, GATA6, GATA2, ASH2L, BRD4, SCRT1, ZNF350, ZNF554, EED
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops