- Basic information
- CohesinDB ID: CDBP00416855
- Locus: chr21-32163391-32163756
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BLY, GSE105028, GSE111537, GSE131606, GSE25021, ENCSR000BUC, ENCSR000BTU, ENCSR000BKV, GSE76893, GSE206145-NatGen2015, ENCSR703TNG, GSE106870, GSE116344, GSE145327, ENCSR000BLS, ENCSR000ECE, ENCSR000EHX, GSE97394, ENCSR000BTQ, ENCSR167MTG, ENCSR054FKH, GSE83726
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Cell type: MCF-7, H1-hESC, Fibroblast, RH4, Hep-G2, CVB-hiPSC, A-549, Ishikawa, HUES64, H9-hESC, SK-N-SH, K-562, OCI-AML-3, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, BCL6, SMC1A, XBP1, ZNF30, SMAD3, FOXA1, ERG3, HOXB13, YY1, RELA, ZBTB2, THRB, RAD21, ARNT, HIF1A, OTX2, GATA3, GABPA, NRIP1, ZNF143, ZNF10, MITF, TERF2, NR2F6, ESRRA, NR2F2, TERF1, ETV1, NR2F1, EZH2, ESR1, GRHL2, CTCF, BCL11A, AR, ZNF257, GATA2, HSF1, NOTCH3, SMC3, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops