- Basic information
- CohesinDB ID: CDBP00416859
- Locus: chr21-32189312-32189997
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SOX2, FOXA1, PBX2, ZFHX2, TFAP4, ZNF90, THAP1, CHD7, PRDM1, ZNF320, ZNF736, ZNF467, RBM39, ESR1, CTCF, TCF12, EP300, ARID5B, LMO1, GATA6, IRF4, E2F1, SMC1, ZNF175, TFAP2C, GLIS1, POU2F2, CHD8, ZSCAN5D, POU5F1, ZNF263, MYCN, KDM4C, RUNX1T1, CTBP1, ZNF317, ZBTB17, ZSCAN21, ZBTB48, ZSCAN5A, DUX4, STAT1, ZNF134, DDX5, ERG2, ERG, ASCL1, NFKB2, ETS1, MYC, EZH1, EOMES, SMARCA4, RAD21, FOXP2, GRHL3, GABPA, APC, XRCC5, STAT3, RCOR1, DACH1, ARNTL, CEBPB, KMT2A, EZH2, EBF3, SPI1, KLF17, ZNF257, HDAC2, GATA2, FLI1, MXI1, ZNF789, RUNX1, SMC1A, BCL6, CEBPA, EZH2phosphoT487, ZNF707, ZFX, POU4F2, ZNF654, ERG3, NFXL1, TET2, TWIST1, PRDM10, CDK6, OSR2, ARNT, CBFA2T3, ZNF10, MED1, MYB, SCRT2, KLF9, BCL11A, HNF4A, REST, ZBTB7A, POU2F3, BCOR, TCF3, SMC3, STAG1, STAG2, CBFA2T2, PPARG, TBL1X, FOXA2, EBF1, ZNF600, WT1, CDK9, HOXB13, KDM1A, YY1, RELA, NEUROD1, SP140, ZIC2, HIF1A, TCF4, ZFP36, OTX2, GATA3, BATF, TAL1, MAX, ZNF449, GATA1, ZNF143, HAND2, PLAG1, KLF4, CEBPG, NCOA3, NR2F2, TCF7L2, TP53, PKNOX1, ZNF334, NFKB1, MYOD1, EGR2, T, PAX3-FOXO1, AR, ZNF324, ZBTB42, RNF2, NOTCH3, BRD4, SCRT1, NCOR1, MAZ, ZSCAN23, AHR
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops