- Basic information
- CohesinDB ID: CDBP00416861
- Locus: chr21-32198407-32198773
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Data sourse: ENCSR000BLD, GSE206145-NatGen2015, ENCSR000EHX, GSE86191
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Cell type: H1-hESC, Fibroblast, HCT-116, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"14_ReprPCWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, CHD8, ZSCAN5D, LDB1, MYCN, ZNF263, POU5F1, ZFX, POU4F2, XBP1, EZH2phosphoT487, ZBTB48, WT1, ZSCAN5A, TET2, KDM1A, ERG, RELA, YY1, ASCL1, NEUROD1, ATF3, MYC, SP140, GRHL3, OTX2, PRDM9, SMC3, MAX, NKX3-1, RCOR1, MED1, EZH2, ESR1, PKNOX1, ZNF334, EBF3, PHOX2B, CTCF, SPI1, EP300, GSPT2, NCOR1, NOTCH3, BRD4, TEAD4, PDX1
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops