- Basic information
- CohesinDB ID: CDBP00416865
- Locus: chr21-32206564-32208012
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Data sourse: ENCSR000BLD, ENCSR000BLY, ENCSR000EHW, GSE101921, ENCSR000EHX, GSE83726, GSE116344
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Cell type: H1-hESC, RH4, HCAEC, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, NFIA, NANOG, CHD8, FOXA2, NKX2-2, MYCN, CHD2, POU5F1, ZFX, XBP1, ZNF317, ZBTB17, FOXA1, HOXB13, TWIST1, PRDM10, KDM1A, RELA, ASCL1, NEUROD1, ETS1, MYC, NFIC, GATA4, RAD21, ISL1, ARNT, NFIB, ZBTB44, OTX2, GATA3, TAL1, MAX, PBX3, FOS, GATA1, RCOR1, HAND2, MED1, MYOG, TRIM28, EZH2, TP53, PITX3, MYOD1, EBF3, PHOX2B, ELF3, JUN, CTCF, EP300, TCF12, BCL11A, AR, GATA2, REST, MAML3, ZBTB42, FLI1, NCOR1, NOTCH3, BRD4, MXI1, SMC1, MRTFB, TEAD4, ZNF554, MYF5, STAG2, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops