- Basic information
- CohesinDB ID: CDBP00416866
- Locus: chr21-32214767-32215308
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR000EHX, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
66% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: EZH2phosphoT487, POU2F2, CHD8, CBFA2T2, TBL1X, POU5F1, NKX2-2, ZNF263, PGR, ZFX, TEAD4, XBP1, SOX2, DUX4, SMAD3, WT1, FOXA1, ZBTB48, SUZ12, BAHD1, HOXB13, ZNF300, ERG, YY1, RELA, ZNF384, OGG1, NEUROD1, ATF3, ISL1, CHD7, GRHL3, HIF1A, ARNT, ZIC2, OTX2, PRDM1, TAL1, TOP2A, ZNF143, GATA1, FOS, HAND2, MED1, ARNTL, KLF4, CEBPB, NCOA3, TEAD1, ZEB1, CREB1, NR2F1, EZH2, ESR1, OCA2, ZNF334, SETDB1, CTCF, T, AR, ZNF257, PAX3-FOXO1, PAX8, ZNF479, RBM25, FOSL2, NOTCH3, BRD4, SCRT1, ZFP69, ZNF528, ZNF440, SMC3, NCOR2, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops