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Basic information

CohesinDB ID: CDBP00416871

Locus: chr21-32240295-32240566

Data sourse: GSE116344

Cell type: RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 66% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 59%, "14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, FOXA1, ZNF90, NFIC, CHD7, RUNX3, MYOG, ETV1, ESR1, EP300, BAF155, DPF2, IRF4, TEAD4, RBPJ, EED, CHD8, MTA2, ZNF317, DUX4, ZSCAN5A, ZBTB48, ERG, OGG1, MYC, BATF3, GABPA, STAT3, NKX3-1, IKZF1, VDR, NR3C1, CEBPB, CREB1, EZH2, SPI1, GATA2, RELB, RUNX1, EZH2phosphoT487, ZFX, POU4F2, RUNX2, GATA4, ARNT, ATF2, PRDM9, ETV6, FOXM1, MED1, PIAS1, SETDB1, STAT5A, BCL11A, REST, ARID1A, ATF7, ASH2L, FOXP1, SMC3, NFATC3, TRP47, CREM, NFATC1, FOXF1, TCF7, HOXB13, YY1, RELA, JUNB, BRG1, HIF1A, SKIL, GATA3, BATF, ZNF143, CBX2, TLE3, MYOD1, AR, ZBTB40, RNF2, IKZF2, BRD4, JUND

Target gene symbol (double-evidenced CRMs): HUNK,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149,

eachgene

Deatailed information for cohesin site CDBP00416871