- Basic information
- CohesinDB ID: CDBP00416879
- Locus: chr21-32252193-32252346
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF283, PGR, ZSCAN5D, MYCN, E2F7, TOP2A, CRY1, NME2, ZFX, XBP1, MEIS2, WT1, ZBTB48, CHD2, SIN3A, TEAD4, TET2, ZBTB33, ZSCAN5A, ZNF513, PBX2, YY1, RELA, ATF3, RUNX2, NFIC, SMARCA4, RAD21, SP140, NRF1, ISL1, TCF4, GATA3, PBX3, MAX, FOXM1, ZNF143, IKZF1, RCOR1, GATA1, HAND2, NR3C1, CEBPB, NR2F2, ETV1, EZH2, PKNOX1, PITX3, ZNF334, EBF3, CTCF, TCF12, JUN, EP300, SP1, BHLHE40, AR, TAF1, GATA2, REST, ZNF366, HSF1, JUND, CLOCK, MAZ, SMC3, FOSL2
- Target gene symbol (double-evidenced CRMs): SCAF4,HUNK,CFAP298-TCP10L,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
ENSG00000265590,
- Related loop:
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31150000-31175000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31250000-31275000~~chr21:32225000-32250000,
chr21:31622590-31624578~~chr21:32257174-32259289,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:32225000-32250000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31780114-31782449~~chr21:32257201-32259301,
chr21:31780134-31782078~~chr21:32256511-32259378,
chr21:31780142-31781787~~chr21:32257174-32259289,
chr21:31780158-31781873~~chr21:32256411-32259438,
chr21:31780165-31781913~~chr21:32257185-32259313,
chr21:31780176-31781715~~chr21:32257195-32260019,
chr21:31780232-31781825~~chr21:32257190-32259329,
chr21:31784874-31786970~~chr21:32256543-32259299,
chr21:31784900-31787437~~chr21:32256367-32259995,
chr21:31784954-31787383~~chr21:32256342-32259326,
chr21:31784991-31787044~~chr21:32257192-32259306,
chr21:31784993-31787270~~chr21:32256274-32259275,
chr21:31784999-31787233~~chr21:32256341-32259331,
chr21:31785031-31787247~~chr21:32256511-32259378,
chr21:31785034-31787230~~chr21:32256411-32259438,
chr21:31785106-31787360~~chr21:32256462-32259302,
chr21:31785152-31787114~~chr21:32257190-32259329,
chr21:31785196-31787413~~chr21:32257174-32259289,
chr21:31785206-31787299~~chr21:32257185-32259313,
chr21:31785218-31787331~~chr21:32256496-32259419,
chr21:31785240-31787470~~chr21:32257315-32259388,
chr21:31785255-31787126~~chr21:32256545-32259247,
chr21:31785270-31788289~~chr21:32257201-32259301,
chr21:31785324-31787086~~chr21:32256476-32259292,
chr21:31800000-31825000~~chr21:32225000-32250000,
chr21:31825000-31850000~~chr21:32225000-32250000,
chr21:31825000-31850000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31865168-31867682~~chr21:32256342-32259326,
chr21:31865180-31867368~~chr21:32257185-32259313,
chr21:31865190-31867889~~chr21:32256367-32259995,
chr21:31865192-31867355~~chr21:32257195-32259363,
chr21:31865197-31867074~~chr21:32256511-32259378,
chr21:31865202-31867213~~chr21:32257174-32259289,
chr21:31865206-31867094~~chr21:32256476-32259292,
chr21:31865207-31867006~~chr21:32256496-32259419,
chr21:31865214-31867338~~chr21:32257201-32259301,
chr21:31865217-31867110~~chr21:32257228-32259294,
chr21:31865220-31867254~~chr21:32256411-32259438,
chr21:31865221-31867070~~chr21:32257315-32259388,
chr21:31865228-31867355~~chr21:32257190-32259329,
chr21:31865230-31867361~~chr21:32256274-32259275,
chr21:31865232-31867115~~chr21:32257195-32260019,
chr21:31865248-31867144~~chr21:32256462-32259302,
chr21:31865272-31867342~~chr21:32256341-32259331,
chr21:31865464-31867091~~chr21:32256545-32259247,
chr21:31865464-31867092~~chr21:32257192-32259306,
chr21:31865505-31867043~~chr21:32256543-32259299,
chr21:31871809-31875540~~chr21:32256411-32259438,
chr21:31872039-31874494~~chr21:32256511-32259378,
chr21:31872042-31874581~~chr21:32256342-32259326,
chr21:31872118-31875754~~chr21:32256367-32259995,
chr21:31872126-31874557~~chr21:32257195-32259363,
chr21:31872415-31873934~~chr21:32257185-32259313,
chr21:31872509-31873790~~chr21:32257190-32259329,
chr21:31875000-31900000~~chr21:32250000-32275000,
chr21:31933177-31934710~~chr21:32257228-32259294,
chr21:31933279-31934543~~chr21:32256462-32259302,
chr21:31950000-31975000~~chr21:32225000-32250000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32225000-32250000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:31991525-31992800~~chr21:32256274-32259275,
chr21:32000000-32025000~~chr21:32250000-32275000,
chr21:32025000-32050000~~chr21:32225000-32250000,
chr21:32050000-32075000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32225000-32250000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32095899-32097665~~chr21:32256342-32259326,
chr21:32095914-32097481~~chr21:32256462-32259302,
chr21:32095923-32097744~~chr21:32257185-32259313,
chr21:32095946-32097766~~chr21:32256274-32259275,
chr21:32095947-32097429~~chr21:32257192-32259306,
chr21:32095949-32097664~~chr21:32256341-32259331,
chr21:32095950-32097502~~chr21:32257195-32259363,
chr21:32095978-32097865~~chr21:32256367-32259995,
chr21:32100000-32125000~~chr21:32250000-32275000,
chr21:32125000-32150000~~chr21:32225000-32250000,
chr21:32125000-32150000~~chr21:32250000-32275000,
chr21:32134808-32137469~~chr21:32257190-32259329,
chr21:32135152-32137406~~chr21:32257185-32259313,
chr21:32250000-32275000~~chr21:32550000-32575000,