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Basic information

CohesinDB ID: CDBP00416884

Locus: chr21-32264631-32265932

Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE25021, GSE111913, GSE206145-NatGen2015, ENCSR153HNT, GSE116344, GSE131606

Cell type: MCF-7, H1-hESC, Fibroblast, HCT-116, RH4, RT-112, K-562, HSPC, DKO

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.900

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 76%, "15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, GLIS1, PGR, OGG1, ZNF660, ZNF600, GRHL3, HIF1A, TP53, ZBTB48, WT1, FOXA1, ZNF334, SMC3, CTCF, ZNF143

Target gene symbol (double-evidenced CRMs): HUNK,TIAM1,MIS18A,CFAP298-TCP10L,SCAF4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000265590,

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Deatailed information for cohesin site CDBP00416884