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Basic information

CohesinDB ID: CDBP00416885

Locus: chr21-32266164-32267358

Data sourse: GSE116344, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, RH4, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 57%, "4_Tx": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, SMC1A, ZSCAN5D, MYCN, PAF1, ZFX, XBP1, ZBTB48, WT1, FOXA1, LEO1, ZNF300, RELA, MYC, CDK6, SP140, GATA3, SUPT5H, CDK8, CHD1, ZNF143, NCOA3, SCRT2, ESR1, OCA2, MED26, NFKB1, CTCF, RBM22, NOTCH3, SCRT1, CLOCK, CUX1, SMC3

Target gene symbol (double-evidenced CRMs): TIAM1,HUNK,SCAF4,CFAP298-TCP10L,MIS18A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000265590,

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Deatailed information for cohesin site CDBP00416885