- Basic information
- CohesinDB ID: CDBP00416886
- Locus: chr21-32276135-32276434
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 95%,
"15_Quies": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: HDGF, ZNF263, RBBP5, ZNF600, LMO2, ZBTB33, PAX5, RBM22
- Target gene symbol (double-evidenced CRMs): MIS18A,TIAM1,HUNK,CFAP298-TCP10L,CFAP298,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
- Related loop:
chr21:29425000-29450000~~chr21:32275000-32300000,
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31125000-31150000~~chr21:32275000-32300000,
chr21:31150000-31175000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31785218-31787331~~chr21:32277768-32279016,
chr21:31825000-31850000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32275000-32300000,
chr21:31875000-31900000~~chr21:32250000-32275000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:32000000-32025000~~chr21:32250000-32275000,
chr21:32050000-32075000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32100000-32125000~~chr21:32250000-32275000,
chr21:32125000-32150000~~chr21:32250000-32275000,
chr21:32250000-32275000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32275000-32300000~~chr21:32600000-32625000,
chr21:32277555-32280325~~chr21:32599877-32601833,
chr21:32277665-32280330~~chr21:32599933-32601810,