- Basic information
- CohesinDB ID: CDBP00416891
- Locus: chr21-32287224-32287305
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 57%,
"5_TxWk": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, HDGF, PGR, MYC, EGLN2, ZNF146, LDB1, NME2, ZFX, NCOA1, BCOR, DDX5, CTCF, MAFK, ZNF316
- Target gene symbol (double-evidenced CRMs): SYNJ1,CFAP298,HUNK,TIAM1,CFAP298-TCP10L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
- Related loop:
chr21:29425000-29450000~~chr21:32275000-32300000,
chr21:31125000-31150000~~chr21:32275000-32300000,
chr21:31850000-31875000~~chr21:32275000-32300000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32275000-32300000~~chr21:32600000-32625000,