Deatailed information for cohesin site CDBP00416895
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00416895
- Locus: chr21-32299751-32300868
- Data sourse: GSE67783, GSE86191, GSE98367, GSE116868, GSE111913, ENCSR153HNT
- Cell type: HCT-116, MB157, RT-112, K-562, HSPC, Macrophage
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 44%,
"15_Quies": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: PGR, MEIS2, XBP1, FOXA1, PBX2, HDGF, ATF3, CDC5L, ELF1, ZNF121, ESR1, OCA2, HDAC8, CTCF, EP300, SOX5, DPF2, PAX8, TRIM24, E2F1, FOXA3, GATAD2A, TFAP2C, POU2F2, CHD8, NANOG, MYCN, POU5F1, ID3, KDM4C, ZBTB48, ZSCAN5A, SAP130, TBP, HNF4G, ERG, MYC, SMARCA4, ARID1B, HOMEZ, XRCC5, ZNF614, IKZF1, LEF1, DNMT3B, ZNF639, NR2F6, NR3C1, CEBPB, CREB1, EZH2, ZNF652, ZHX2, MIXL1, IRF1, HDAC2, SSRP1, ZNF644, SMARCA5, NFIL3, NCOA2, ETV5, SMC1A, BCL6, CEBPA, CRY1, SOX13, ZFX, TET2, ZBTB2, GATA4, ZNF184, ARNT, BACH1, SOX11, SMAD4, CBFA2T3, SUPT5H, CDK8, SMARCB1, TEAD3, ZNF3, RBM22, BCL11A, GSPT2, HNF4A, REST, BCOR, MBD2, SMC3, STAG1, TRP47, PPARG, AGO1, TBL1X, FOXA2, CREM, PAF1, ZNF600, ZBED1, WT1, ZBTB33, ZNF580, KDM1A, YY1, RELA, ZNF830, SP140, HIF1A, MAX, GATA1, ZNF143, CEBPG, TP53, ARRB1, BHLHE40, AR, ARID4B, EGR1, HSF1, NCOR1, NOTCH3, JUND, CLOCK, CUX1, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,SYNJ1,TIAM1,CFAP298,PAXBP1,HUNK,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 78
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000156299, ENSG00000142149, ENSG00000166979, ENSG00000265590, ENSG00000159079, ENSG00000159082, ENSG00000159086,
- Related loop: chr21:29050000-29075000~~chr21:32300000-32325000, chr21:29425000-29450000~~chr21:32275000-32300000, chr21:31125000-31150000~~chr21:32275000-32300000, chr21:31850000-31875000~~chr21:32275000-32300000, chr21:32275000-32300000~~chr21:32550000-32575000, chr21:32275000-32300000~~chr21:32575000-32600000, chr21:32275000-32300000~~chr21:32600000-32625000, chr21:32300000-32325000~~chr21:32450000-32475000, chr21:32300000-32325000~~chr21:32575000-32600000, chr21:32300000-32325000~~chr21:32600000-32625000, chr21:32300000-32325000~~chr21:32725000-32750000, chr21:32305431-32307333~~chr21:32600164-32601910,
Tools:
- Assay
