- Basic information
- CohesinDB ID: CDBP00416903
- Locus: chr21-32313137-32313329
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 65%,
"5_TxWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, TRP47, POU2F2, BRD1, ZSCAN5D, MYCN, ZNF263, AGO1, PAF1, ZFX, FOXA2, XBP1, PPARG, ZBTB48, WT1, ZSCAN5A, DUX4, FOXA1, TET2, ERG3, LEO1, ZFHX2, KDM1A, ERG, RELA, ZNF384, ATF3, AHR, MYC, SP140, GRHL3, HIF1A, ARNT, NKX2-1, ATF2, SMC3, GLYR1, GABPA, SUPT5H, AGO2, SNRNP70, DNMT3B, PRDM14, PLAG1, VDR, CEBPB, TEAD3, ELF1, TEAD1, NR2F1, ESR1, GRHL2, EGR2, CTCF, RBM22, SPI1, AR, POU2F3, ZBTB26, JUND, MAZ, AATF, TEAD4, ZNF175, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): URB1,PAXBP1,EVA1C,CFAP298,SYNJ1,CFAP298-TCP10L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:29050000-29075000~~chr21:32300000-32325000,
chr21:32300000-32325000~~chr21:32450000-32475000,
chr21:32300000-32325000~~chr21:32575000-32600000,
chr21:32300000-32325000~~chr21:32600000-32625000,
chr21:32300000-32325000~~chr21:32725000-32750000,