- Basic information
- CohesinDB ID: CDBP00416914
- Locus: chr21-32330737-32331391
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Data sourse: ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, GSE72082, ENCSR000BLS, ENCSR054FKH, GSE25021, ENCSR000EDW
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Cell type: Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 53%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, CBX5, HMG20A, LCORL, SOX2, MEIS2, HNF1A, FOXA1, RBFOX2, PBX2, RXRB, LEO1, TFAP4, HDGF, ATF3, NFIC, ZFP64, ZNF362, CHD7, RUNX3, MXD4, GLYR1, ZNF736, JMJD1C, TEAD1, ELF1, TRIM28, ETV1, RCOR2, ESR1, FUS, CTCF, JUN, EP300, GATA6, SOX5, TEAD4, FOXA3, ZNF175, ZNF92, GATAD2A, PDX1, RBPJ, MLX, GLIS1, NANOG, CHD8, BRD1, POU2F2, MYCN, POU5F1, ZBTB48, ZSCAN5A, GATAD1, SAP130, NBN, ARID3A, HNF4G, ERG, ETS1, MYC, SMARCA4, EOMES, ARID1B, RAD21, HOMEZ, RXRA, NKX2-1, PROX1, MCRS1, GABPA, STAT3, ZNF614, SOX10, XRCC5, MIER3, INO80, NR2F6, VDR, NR3C1, CEBPB, CREB1, CCAR2, EZH2, ZNF652, GABPB1, SPI1, TFE3, MIXL1, HDAC2, GATA2, ZNF182, ZNF644, MXD3, FLI1, DRAP1, MXI1, ZGPAT, ZNF490, RELB, MRTFB, NFIL3, ETV5, RUNX1, THAP11, SMC1A, BCL6, CEBPA, NKX2-2, SIRT6, EZH2phosphoT487, SOX13, ZFX, FIP1L1, SMAD3, ZNF770, SP5, TRIM22, SMARCC1, MEF2A, MYBL2, RARA, ZNF384, ZNF35, RUNX2, GATA4, ARNT, HMGB2, ATF2, SMAD4, ZNF48, ZNF354A, PBX3, FOS, CDK8, SMARCB1, HMGXB4, SUPT5H, MED1, TEAD3, U2AF1, ZNF3, STAT5A, RBM22, SP1, HNF4A, IKZF5, ATF7, ASH2L, AFF1, FOXP1, SMC3, STAG1, ETV4, SKI, ZNF283, PPARG, FOXA2, CREM, MEIS1, PAF1, MIER2, GTF2B, WT1, TCF7, ZNF580, KDM1A, YY1, RELA, TARDBP, NEUROD1, JUNB, AHR, SP140, ZIC2, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, ZNF143, CEBPG, NR2F2, NEUROG2, TCF7L2, ZNF334, MYOD1, ELF3, PHF5A, KAT8, T, BHLHE40, AR, ARID4B, NFKBIZ, ZBTB26, HSF1, NOTCH3, JUND, BRD4, IKZF2, CUX1, MAZ, ZZZ3, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): GART,SON,URB1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000159086,
ENSG00000159131,
ENSG00000159140,
- Related loop:
chr21:29025000-29050000~~chr21:32325000-32350000,
chr21:29050000-29075000~~chr21:32325000-32350000,
chr21:31784993-31787270~~chr21:32327704-32330556,
chr21:32325000-32350000~~chr21:32750000-32775000,
chr21:32325000-32350000~~chr21:33500000-33525000,
chr21:32325000-32350000~~chr21:33525000-33550000,