Deatailed information for cohesin site CDBP00416926

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  • Basic information
  • CohesinDB ID: CDBP00416926
  • Locus: chr21-32355525-32355982
  • Data sourse: ENCSR153HNT, GSE86191
  • Cell type: K-562, HCT-116
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 0% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.978
  • Subunit: SA1,Rad21
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 90% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "4_Tx": 88%, "5_TxWk": 12%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: PGR, XBP1, FOXA1, RBFOX2, LEO1, ATF3, THAP1, RUNX3, WDHD1, CBFB, GLYR1, SMARCE1, PAX5, TP63, MITF, JMJD1C, ELF1, TRIM28, TEAD1, RBM39, ETV1, ZNF217, ESR1, LMO2, COBLL1, JUN, CTCF, BAF155, E4F1, EP300, MNT, DPF2, SOX4, TRIM24, RFX5, E2F1, ZNF280A, TEAD4, TFAP2C, EED, GLIS1, JARID2, POU2F2, CHD8, ZSCAN5D, POU5F1, MYCN, TOP2A, RUNX1T1, CTBP1, ZBTB48, ZSCAN5A, DDX5, ERG, OGG1, NFKB2, ETS1, MYC, SMARCA4, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, RCOR1, DNMT3B, HNRNPH1, NR3C1, ESRRA, CEBPB, ZNF750, CREB1, EZH2, GRHL2, EBF3, GABPB1, ZHX2, SPI1, HDAC2, GATA2, FLI1, SREBF1, RELB, NCOA2, PTBP1, RUNX1, CBX1, SMC1A, CEBPA, SIRT6, SIN3A, ZFX, SMAD3, TET2, TWIST1, ZXDC, CREBBP, ZNF384, RUNX2, GR, ARNT, PBX4, NRF1, ZNF48, PRDM9, FOXM1, SUPT5H, CHD1, FOS, SMARCB1, ZEB1, SCRT2, PIAS1, KLF9, SETDB1, ZNF22, RBM22, BCL11A, TFAP2A, HNF4A, REST, ZNF479, POU2F3, ASH2L, AFF1, FOXP1, AATF, SMC3, STAG1, TRP47, ZNF316, CBX3, AGO1, FOXA2, TBL1X, PAF1, EBF1, PPARG, ZNF692, WT1, ESR2, HOXB13, KDM1A, YY1, RELA, NEUROD1, ISL1, SP140, ZIC2, SKIL, HIF1A, OTX2, GATA3, BATF, TAL1, MAX, NRIP1, ZNF143, AGO2, MTA1, HAND2, CBX2, CEBPG, KLF4, NCOA3, NR2F2, NR2F1, NEUROG2, KDM5B, TP53, ZNF334, NFKB1, MYOD1, PHOX2B, AR, ZBTB40, RXR, EGLN2, ZBTB42, HEXIM1, EGR1, HSF1, ZBTB26, SCRT1, BRD4, CLOCK, MAZ, ZZZ3, ZNF24, AHR, FOSL2
  • Target gene symbol (double-evidenced CRMs): PAXBP1,SYNJ1,GART,CFAP298,SON,URB1,CFAP298-TCP10L
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 6
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops
  • Related gene: ENSG00000142207, ENSG00000265590, ENSG00000159079, ENSG00000159082, ENSG00000159086, ENSG00000159131, ENSG00000159140,
  • Related loop: chr21:27500000-27525000~~chr21:32350000-32375000, chr21:29050000-29075000~~chr21:32350000-32375000, chr21:32350000-32375000~~chr21:32600000-32625000, chr21:32350000-32375000~~chr21:32725000-32750000, chr21:32350000-32375000~~chr21:32750000-32775000, chr21:32350000-32375000~~chr21:33525000-33550000, chr21:32350000-32375000~~chr21:34325000-34350000, chr21:32359189-32360657~~chr21:32599840-32601900,
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