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Basic information

CohesinDB ID: CDBP00416936

Locus: chr21-32374258-32374575

Data sourse: GSE138405, GSE98367

Cell type: Hela-Kyoto, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "4_Tx": 56%, "5_TxWk": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, PBX1, KLF4, CEBPB, SMC1A, EBF1, WT1, ATF4, TCF3, FOXA1, TAL1, PAX5, RBM22, SUPT5H, ERG, EHF

Target gene symbol (double-evidenced CRMs): SYNJ1,URB1,GART,SON,CFAP298,PAXBP1,CFAP298-TCP10L

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142207, ENSG00000265590, ENSG00000159079, ENSG00000159082, ENSG00000159086, ENSG00000159131, ENSG00000159140,

eachgene

Deatailed information for cohesin site CDBP00416936