- Basic information
- CohesinDB ID: CDBP00416937
- Locus: chr21-32377005-32377825
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Data sourse: ENCSR000BLD, GSE86191, GSE138405, GSE25021, GSE105028, GSE206145-NatGen2015, GSE126990
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Cell type: H1-hESC, Fibroblast, HCT-116, Hela-Kyoto, Hep-G2, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 59%,
"5_TxWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, XBP1, FOXA1, RBFOX2, LEO1, RXRB, MLL4, ZNF28, HDGF, THRB, NFIC, ATF3, ZFP64, CTCFL, PRDM1, GLYR1, ZNF189, PAX5, TP63, SFPQ, CDX2, ZNF467, MYOG, ZNF629, KLF5, TEAD1, ZNF121, RBM39, SNAI2, ESR1, OCA2, TP73, CTCF, TCF12, JUN, BAF155, EP300, MNT, GATA6, PAX8, PRDM4, IRF4, E2F1, SMC1, TEAD4, PDX1, TFAP2C, GLIS1, POU2F2, CHD8, ZSCAN5D, POU5F1, MYCN, TOP2A, RUNX1T1, ZNF778, ZMYND11, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ZSCAN21, ZNF205, GATAD1, DDX5, ERG, HOXC5, ASCL1, OGG1, ETS1, MYC, SMARCA4, TOP1, RAD21, GRHL3, RXRA, GABPA, STAT3, APC, SOX10, UBN1, NKX3-1, XRCC5, RCOR1, DNMT3B, ARNTL, NR3C1, CEBPB, ESRRA, CREB1, ZBTB11, EZH2, SPI1, ZNF664, EHF, HDAC2, GATA2, SSRP1, MXI1, SMARCA5, NFIL3, NCOA2, ZIM3, RUNX1, CTNNB1, SMC1A, CEBPA, NKX2-2, SIN3A, ZFX, AFF4, SMAD3, ZNF770, TET2, ZNF654, ERG3, ZNF513, TWIST1, PRDM10, CREBBP, ZNF384, ZBTB2, RUNX2, GATA4, PBX4, NRF1, SOX11, DAXX, ARNT, ZNF48, PRDM9, ZEB2, ATF2, NFIB, PBX3, MAFB, SUPT5H, FOS, MED1, TEAD3, SCRT2, ZMYM3, RBM22, MAFK, NIPBL, SP1, BCL11A, HNF4A, REST, ZNF479, RBM25, ZHX1, ASH2L, HNRNPLL, BCOR, FOXP1, PRDM6, SMC3, STAG1, MLLT1, NFATC3, CBFA2T2, PPARG, FOXA2, PAF1, ZNF600, ZNF692, GTF2B, WT1, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, JUNB, SP140, TCF4, HIF1A, ZIC2, OTX2, GATA3, BATF, TAL1, MAX, NRIP1, GATA1, ZNF143, SPIB, HAND2, SP7, NR2F2, NR2F1, TCF7L2, TP53, ZNF334, MYOD1, ARRB1, ARID4B, PAX3-FOXO1, AR, EGLN2, HSF1, ZBTB26, NCOR1, BRD4, JUND, SCRT1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): AP000311.1,PAXBP1,CFAP298,CRYZL1,SYNJ1,GART,CFAP298-TCP10L,URB1,AP000295.1,ITSN1,HUNK,IL10RB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 35
- Number of somatic mutations (non-coding): 10
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000142207,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
ENSG00000249624,
ENSG00000243646,
ENSG00000159131,
ENSG00000249209,
ENSG00000205758,
ENSG00000205726,
- Related loop:
chr21:27500000-27525000~~chr21:32350000-32375000,
chr21:29050000-29075000~~chr21:32350000-32375000,
chr21:31850000-31875000~~chr21:32375000-32400000,
chr21:32350000-32375000~~chr21:32600000-32625000,
chr21:32350000-32375000~~chr21:32725000-32750000,
chr21:32350000-32375000~~chr21:32750000-32775000,
chr21:32350000-32375000~~chr21:33525000-33550000,
chr21:32350000-32375000~~chr21:34325000-34350000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32375000-32400000~~chr21:32725000-32750000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32800000-32825000,
chr21:32375000-32400000~~chr21:33275000-33300000,
chr21:32375000-32400000~~chr21:33500000-33525000,
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:32375000-32400000~~chr21:34500000-34525000,