- Basic information
- CohesinDB ID: CDBP00416947
- Locus: chr21-32401093-32405487
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
-
Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, HSPC, CVI-hiPSC, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, TC-71, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, CNCC-WT33iPSC, BGO3, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 78% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.156
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 36%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, KLF4, CHD8, ZSCAN5D, POU5F1, TEAD1, ZFX, MCM3, GRHL3, BRD4, ZNF766, PBX2, EED
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,SYNJ1,EVA1C,PAXBP1,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 19
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:31850000-31875000~~chr21:32375000-32400000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32375000-32400000~~chr21:32725000-32750000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32800000-32825000,
chr21:32375000-32400000~~chr21:33275000-33300000,
chr21:32375000-32400000~~chr21:33500000-33525000,
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:32375000-32400000~~chr21:34500000-34525000,
chr21:32400000-32425000~~chr21:32500000-32525000,
chr21:32400000-32425000~~chr21:32550000-32575000,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32600000-32625000,
chr21:32400000-32425000~~chr21:32725000-32750000,
chr21:32400000-32425000~~chr21:32825000-32850000,
chr21:32400000-32425000~~chr21:33175000-33200000,
chr21:32401983-32404518~~chr21:32561692-32563664,
chr21:32401983-32404518~~chr21:32568620-32570676,
chr21:32401983-32404518~~chr21:32600164-32601910,
chr21:32401987-32404521~~chr21:32561668-32563604,
chr21:32401987-32404521~~chr21:32568752-32570914,
chr21:32401987-32404521~~chr21:32599840-32601943,
chr21:32402003-32404663~~chr21:32561174-32563689,
chr21:32402003-32404663~~chr21:32568752-32570717,
chr21:32402041-32404495~~chr21:32568771-32570910,
chr21:32402041-32404495~~chr21:32599358-32601801,
chr21:32402043-32404526~~chr21:32561117-32563575,
chr21:32402043-32404526~~chr21:32568694-32570973,
chr21:32402043-32404526~~chr21:32599739-32601803,
chr21:32402050-32404562~~chr21:32561335-32563466,
chr21:32402050-32404562~~chr21:32568741-32570718,
chr21:32402058-32404410~~chr21:32561685-32563661,
chr21:32402064-32404444~~chr21:32568763-32570866,
chr21:32402099-32404537~~chr21:32561649-32563602,
chr21:32402099-32404537~~chr21:32568755-32571056,
chr21:32402099-32404537~~chr21:32599842-32601842,
chr21:32402110-32404433~~chr21:32599840-32601900,
chr21:32402112-32404476~~chr21:32561642-32563675,
chr21:32402112-32404476~~chr21:32568659-32570952,
chr21:32402112-32404476~~chr21:32599933-32601810,
chr21:32402135-32404476~~chr21:32577078-32579215,
chr21:32402135-32404476~~chr21:32598994-32601796,
chr21:32402183-32404544~~chr21:32600127-32601810,
chr21:32402211-32404532~~chr21:32561346-32563661,
chr21:32402211-32404532~~chr21:32599851-32601933,
chr21:32402220-32404493~~chr21:32568752-32570984,
chr21:32402220-32404493~~chr21:32600085-32601819,
chr21:32402227-32404394~~chr21:32568753-32570714,
chr21:32402351-32404483~~chr21:32561228-32563461,
chr21:32402351-32404483~~chr21:32599809-32601807,
chr21:32402391-32404315~~chr21:32577279-32579257,
chr21:32402421-32404494~~chr21:32561489-32563438,
chr21:32402421-32404494~~chr21:32568683-32570920,
chr21:32402421-32404494~~chr21:32599840-32601796,
chr21:32402474-32404277~~chr21:32599132-32601791,
chr21:32402478-32404275~~chr21:32568878-32570910,
chr21:32402478-32404275~~chr21:32599877-32601833,
chr21:32402530-32404222~~chr21:32568734-32570738,
chr21:32402531-32404281~~chr21:32568877-32570702,
chr21:32402531-32404281~~chr21:32600444-32601827,
chr21:32402537-32404397~~chr21:32568723-32570970,
chr21:32402537-32404397~~chr21:32599838-32601801,
chr21:32402544-32404481~~chr21:32568763-32570909,
chr21:32402544-32404481~~chr21:32599871-32601809,
chr21:32402553-32404518~~chr21:32561671-32563639,
chr21:32402553-32404518~~chr21:32568691-32570731,
chr21:32402553-32404518~~chr21:32599805-32601899,
chr21:32402562-32404219~~chr21:32600440-32601787,
chr21:32402571-32404278~~chr21:32569132-32570716,
chr21:32402573-32404309~~chr21:32561693-32563678,
chr21:32402573-32404309~~chr21:32568716-32570850,
chr21:32402573-32404309~~chr21:32599384-32601896,
chr21:32402575-32404404~~chr21:32561712-32563519,
chr21:32402578-32404394~~chr21:32568853-32570643,
chr21:32402578-32404394~~chr21:32599082-32601833,
chr21:32402578-32404394~~chr21:33126534-33128328,
chr21:32402579-32404271~~chr21:32600154-32601803,
chr21:32402588-32404419~~chr21:32568769-32570666,
chr21:32402590-32404484~~chr21:32568776-32570930,
chr21:32402590-32404484~~chr21:32599845-32601920,
chr21:32402599-32404105~~chr21:32568593-32570609,
chr21:32402599-32404105~~chr21:32599635-32601835,
chr21:32402604-32404315~~chr21:32568733-32570864,
chr21:32402609-32404463~~chr21:32577411-32579232,
chr21:32402611-32404103~~chr21:32568778-32570670,
chr21:32402611-32404103~~chr21:32600122-32601828,
chr21:32402633-32404083~~chr21:32568855-32570579,
chr21:32402633-32404158~~chr21:32600087-32601774,
chr21:32402649-32404059~~chr21:32600348-32601794,
chr21:32402698-32403972~~chr21:32600504-32601777,