- Basic information
- CohesinDB ID: CDBP00416952
- Locus: chr21-32417894-32418785
-
Data sourse: GSE206145, GSE86191
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Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 35%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, POU2F2, POU5F1, ZFX, POU4F2, XBP1, ZBTB48, ZSCAN5A, STAT1, FOXA1, WT1, HOXB13, RELA, BRG1, ZBTB44, SP140, GRHL3, GATA1, ARNTL, NR2F1, ESR1, CTCF, SPI1, AR, PAX8, RFX5, HNRNPLL, BRD4
- Target gene symbol (double-evidenced CRMs): PAXBP1,CFAP298-TCP10L,CFAP298,SYNJ1,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:32400000-32425000~~chr21:32500000-32525000,
chr21:32400000-32425000~~chr21:32550000-32575000,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32600000-32625000,
chr21:32400000-32425000~~chr21:32725000-32750000,
chr21:32400000-32425000~~chr21:32825000-32850000,
chr21:32400000-32425000~~chr21:33175000-33200000,
chr21:32412413-32413787~~chr21:32599845-32601920,
chr21:32412549-32415746~~chr21:32568763-32570909,
chr21:32412635-32415974~~chr21:32561117-32563575,
chr21:32412635-32415974~~chr21:32568694-32570973,
chr21:32412745-32415761~~chr21:32568706-32571494,
chr21:32412745-32415761~~chr21:32598994-32601796,
chr21:32413227-32415524~~chr21:32568643-32570980,
chr21:32413259-32415823~~chr21:32568723-32570970,
chr21:32413259-32415823~~chr21:32599838-32601801,
chr21:32413356-32415861~~chr21:32561346-32563661,
chr21:32413356-32415861~~chr21:32568729-32570718,
chr21:32413356-32415861~~chr21:32599851-32601933,
chr21:32413407-32415950~~chr21:32561489-32563438,
chr21:32413407-32415950~~chr21:32568683-32570920,
chr21:32413407-32415950~~chr21:32599840-32601796,
chr21:32413601-32416113~~chr21:32561649-32563602,
chr21:32413601-32416113~~chr21:32568755-32571056,
chr21:32413601-32416113~~chr21:32599842-32601842,
chr21:32413701-32415963~~chr21:32561671-32563639,
chr21:32413701-32415963~~chr21:32599805-32601899,
chr21:32413909-32415933~~chr21:32599809-32601807,
chr21:32413950-32415829~~chr21:32600085-32601819,
chr21:32414014-32416231~~chr21:32568659-32570952,
chr21:32414040-32415387~~chr21:32568752-32570914,