- Basic information
- CohesinDB ID: CDBP00416956
- Locus: chr21-32428298-32429487
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Data sourse: ENCSR000BLD, GSE67783, ENCSR000BKV, GSE138405, ENCSR879KXD, GSE206145-NatGen2015, GSE68388, GSE73207
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Cell type: H1-hESC, Fibroblast, Hela-Kyoto, TF-1, K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 46%,
"7_Enh": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, HDAC2, GATA2, MAX, ELF1, LDB1, CEBPD, PML, MYC, TRIM28, CBX3, NR2F2, E2F6, RCOR1, TAL1, TEAD4, GATA1, NFE2, STAT5A
- Target gene symbol (double-evidenced CRMs): EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops