- Basic information
- CohesinDB ID: CDBP00416959
- Locus: chr21-32432457-32433877
-
Data sourse: ENCSR000BLD, GSE104888, GSE72082, ENCSR150EFU, GSE105028, GSE121355, GSE131606, ENCSR000EDW, GSE67783, ENCSR000BKV, GSE86191, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR000BLS, ENCSR000ECE, ENCSR620NWG, ENCSR167MTG, ENCSR853VWZ, GSE110061, GSE129526, GSE111913, ENCSR054FKH, GSE68388
-
Cell type: H1-hESC, HCT-116, Hep-G2, A-549, RT-112, K-562, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 59%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CTCF, RAD21
- Target gene symbol (double-evidenced CRMs): EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 66
- Number of somatic mutations (non-coding): 10
- Related genes and loops