- Basic information
- CohesinDB ID: CDBP00416975
- Locus: chr21-32467324-32467836
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Data sourse: ENCSR000BLD, GSE67783, ENCSR000BKV, GSE86191, GSE110061, GSE105028, GSE206145, GSE83726, GSE106870, GSE97394
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Cell type: RPE, H1-hESC, HCT-116, RH4, HUES64, K-562, CVI-hiPSC, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 51%,
"15_Quies": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CFAP298,AP000295.1,CFAP298-TCP10L,EVA1C,URB1,IL10RB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 102
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000249624,
ENSG00000243646,
- Related loop:
chr21:32025000-32050000~~chr21:32450000-32475000,
chr21:32300000-32325000~~chr21:32450000-32475000,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32450000-32475000~~chr21:33275000-33300000,