- Basic information
- CohesinDB ID: CDBP00416980
- Locus: chr21-32473670-32479773
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Data sourse: ShirahigeLab-GSE177045, ENCSR000BSB, ENCSR501LQA, GSE116868, ENCSR150EFU, GSE131606, ENCSR330ELC, ENCSR917QNE, GSE165895, GSE67783, GSE86191, GSE138405, GSE101921, ShirahigeLab-NatGen2015, GSE94872, ShirahigeLab, ENCSR247LSH, ENCSR767DFK, ENCSR984DZW, ENCSR495WGO, ENCSR853VWZ, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR153HNT, GSE68388, GSE126990, ENCSR748MVX
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hela-Kyoto, MB157, A-549, HUVEC, HCAEC, RT-112, IMR-90, HSPC, K-562, Liver, HFFc6, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 14% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 35%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, NANOG, FOXA2, SOX2, ZFX, STAG2, NME2, PAF1, SMAD3, WT1, ZSCAN5A, FOXA1, MLL4, SMARCC1, HOXC5, ERG, RELA, IRF2, JUNB, ETS1, RUNX2, MYC, SMARCA4, NFIC, OSR2, RAD21, PBX4, DAXX, CBFB, HMGB2, OTX2, GLYR1, GATA3, APC, STAT3, MAX, TAL1, XRCC5, CDK8, MITF, UBN1, TP63, MED1, FOS, GATA1, KLF4, MAF, ZNF121, KMT2A, KLF6, ETV1, TCF7L2, MYB, TP53, ESR1, TP73, BMPR1A, ZIM3, HNF1B, GRHL2, JUN, CTCF, ELF3, BCL11A, TCF12, TBX21, AR, IRF1, GATA2, BRD4, PHIP, E2F1, MAZ, SMC1, SMC3, STAG1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): IL10RB,CFAP298,AP000295.1,CFAP298-TCP10L,URB1,EVA1C,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 156
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000249624,
ENSG00000243646,
- Related loop:
chr21:31275000-31300000~~chr21:32475000-32500000,
chr21:32025000-32050000~~chr21:32450000-32475000,
chr21:32300000-32325000~~chr21:32450000-32475000,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32450000-32475000~~chr21:33275000-33300000,
chr21:32475000-32500000~~chr21:32575000-32600000,