- Basic information
- CohesinDB ID: CDBP00416985
- Locus: chr21-32485253-32485688
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Data sourse: GSE138405, GSE86191
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Cell type: Hela-Kyoto, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, BRD1, MYCN, RUNX1T1, ZFX, ZNF600, ZBTB48, WT1, STAT1, FOXA1, TET2, ERG, RELA, RUNX2, SP140, GRHL3, HIF1A, TFDP1, PROX1, NKX2-1, GABPA, STAT3, MAX, TP63, CDK8, VDR, CEBPB, NR2F2, TRIM28, ESR1, TP53, ZNF334, NFKB1, ELF3, JUN, CTCF, SPI1, BCL11A, EHF, AR, GATA6, FLI1, HSF1, HNRNPLL, BRD4, CLOCK, ZNF528
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,CFAP298,TIAM1,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops