Deatailed information for cohesin site CDBP00416993
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- Basic information
- CohesinDB ID: CDBP00416993
- Locus: chr21-32506555-32507085
- Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, GSE206145
- Cell type: MCF-7, H1-hESC, RPE, HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 51%,
"15_Quies": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: HIF1A, NRIP1, FOXA1, ESR1
- Target gene symbol (double-evidenced CRMs): CFAP298,SYNJ1,EVA1C,CFAP298-TCP10L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
Tools:
- Assay
