- Basic information
- CohesinDB ID: CDBP00416994
- Locus: chr21-32507382-32508856
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Data sourse: GSE67783, GSE86191, GSE98367, GSE120943, ENCSR153HNT
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Cell type: HCT-116, Monocytes, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 37%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, NANOG, BCL6, TBL1X, MYCN, ZNF263, BRF2, NFATC1, ZFX, AFF4, XBP1, CTBP1, ZBTB48, CRY1, NME2, FOXA1, BRD1, DDX5, ZNF18, BCL3, ZKSCAN1, YY1, RELA, KDM1A, TARDBP, HOXC5, EHMT2, MYC, ZNF184, HIF1A, ZNF48, TAL1, MAX, ZSCAN4, PBX3, GATA1, ZNF143, CDK8, IKZF1, STAT3, NFRKB, ARNTL, GMEB1, TCF7L2, MLLT1, EZH2, ESR1, OCA2, MED26, KDM5B, L3MBTL2, TP53, CHD8, CTCF, TCF12, SPI1, EP300, GSPT2, MNT, AR, PHF20, IRF1, PAX8, HDAC2, SSRP1, ARID2, GATA2, HSF1, BRD4, TCF3, CLOCK, MAZ, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,CFAP298,EVA1C,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 0
- Related genes and loops