- Basic information
- CohesinDB ID: CDBP00417001
- Locus: chr21-32526868-32527322
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Data sourse: GSE206145, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, E2F7, SOX2, NME2, FOXA1, HDGF, ATF3, NFIC, ZFP64, CHD7, MXD4, ZNF189, MITF, ZNF629, MAF, TEAD1, TRIM28, ELF1, NFE2L2, ESR1, OCA2, HNF1B, USF2, CTCF, JUN, TCF12, EP300, ZBTB20, GATA6, DPF2, SOX4, SOX6, E2F1, SMC1, GATAD2A, RBPJ, GLIS1, BRD1, ZSCAN5D, POU5F1, MYCN, CTBP1, ZBTB17, ZBTB48, STAT1, DDX5, TBP, ERG, PAX6, HOXC5, ASCL1, OGG1, ZNF341, ZBTB8A, ETS1, MYC, SMARCA4, ARID1B, RAD21, LHX2, GRHL3, RXRA, PROX1, APC, XRCC5, STAT3, ZNF614, PRDM14, IKZF1, RCOR1, NFE2, NR2F6, ZNF639, VDR, NR3C1, ESRRA, CEBPB, HNRNPL, CREB1, KLF8, GABPB1, SPI1, EHF, KLF17, HDAC2, GATA2, FLI1, MRTFB, ZNF554, ETV5, RUNX1, MAFG, SMC1A, HDAC1, SIRT6, SIN3A, ZFX, NFKBIA, SMAD3, ERG3, SMARCC1, ZBTB2, TAF15, RUNX2, GATA4, GR, ZNF184, PBX4, NRF1, ARNT, HMGB2, ATF2, ZNF48, PRDM9, PBX3, CHD1, FOS, MED1, TEAD3, KDM6B, C11orf30, SETDB1, MAFK, BCL11A, SP1, USF1, REST, ZBTB7A, HNRNPLL, PHIP, PRDM6, AATF, STAG2, STAG1, ZNF394, TRP47, FOXA2, SS18, ZNF600, WT1, ZBTB33, HOXB13, YY1, RELA, JUNB, SP140, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, GFI1B, NR2F2, NR2F1, TP53, ZNF334, BHLHE40, AR, RXR, EGR1, HSF1, RNF2, ZBTB26, BRD4, JUND, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops