- Basic information
- CohesinDB ID: CDBP00417002
- Locus: chr21-32529512-32530028
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Data sourse: GSE67783, ENCSR153HNT, GSE86191, ENCSR767DFK
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Cell type: K-562, A-549, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, BCL6, MYCN, ZFX, FOXA1, HDGF, ZNF112, GR, GRHL3, GABPA, STAT3, MAX, SP2, MITF, MED1, PLAG1, NR3C1, RBM39, ESR1, CTCF, USF1, AR, GATA2, ZNF479, E2F4, RAD51, HNRNPLL, BRD4, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops