- Basic information
- CohesinDB ID: CDBP00417011
- Locus: chr21-32548853-32549711
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Data sourse: GSE86191, ENCSR153HNT, ENCSR879KXD, GSE73207
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Cell type: K-562, TF-1, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 74%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, ZFX, CTBP1, STAT1, PBX2, HOXB13, ERG, HDGF, NEUROD1, NFIC, SMARCA4, ZNF184, ARID1B, HMBOX1, GABPA, TAL1, SMARCE1, GATA1, IKZF1, CDK8, RCOR1, CBX2, ZNF592, TRIM28, ETV1, LMO2, GABPB1, JUN, SPI1, BCL11A, E4F1, AR, DPF2, ZBTB40, GATA2, RNF2, JUND, BCOR, NCOR2, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops