- Basic information
- CohesinDB ID: CDBP00417013
- Locus: chr21-32555986-32556336
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 74%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, XBP1, ESR1, BRD4, MAX, ZNF143, KLF1
- Target gene symbol (double-evidenced CRMs): MIS18A,EVA1C,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000159055,
ENSG00000166979,
ENSG00000205670,
- Related loop:
chr21:32250000-32275000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32400000-32425000~~chr21:32550000-32575000,
chr21:32402003-32404663~~chr21:32561174-32563689,
chr21:32402043-32404526~~chr21:32561117-32563575,
chr21:32402050-32404562~~chr21:32561335-32563466,
chr21:32402351-32404483~~chr21:32561228-32563461,
chr21:32412635-32415974~~chr21:32561117-32563575,
chr21:32550000-32575000~~chr21:34350000-34375000,