- Basic information
- CohesinDB ID: CDBP00417025
- Locus: chr21-32580904-32582331
-
Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE116344
-
Cell type: RPE, Fibroblast, RH4, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 42%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, LDB1, ZFX, WT1, ZBTB48, FOXA1, TET2, CBX8, DDX5, HOXB13, PRDM10, ERG, YY1, BMI1, ATF3, SMARCA4, RFX1, MCM3, SP140, ZFP36, PAX5, CDK8, CBX2, CEBPB, EZH2, CTCF, AR, HDAC2, ZBTB7A, ASH2L, RNF2, HSF1, MAZ, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): TIAM1,SCAF4,MIS18A,EVA1C,CFAP298-TCP10L,URB1,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 117
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
- Related loop:
chr21:22775000-22800000~~chr21:32575000-32600000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:31872680-31874526~~chr21:32577373-32579026,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32300000-32325000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32402135-32404476~~chr21:32577078-32579215,
chr21:32402391-32404315~~chr21:32577279-32579257,
chr21:32402609-32404463~~chr21:32577411-32579232,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32475000-32500000~~chr21:32575000-32600000,