- Basic information
- CohesinDB ID: CDBP00417029
- Locus: chr21-32590405-32590668
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Data sourse: GSE206145, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, HMG20A, HNF1A, ZNF101, FOXA1, SUZ12, RBFOX2, RXRB, KDM3A, TFAP4, HDGF, TSC22D4, ATF3, NFIC, THRB, PRDM1, ATF4, CDX2, TEAD1, ELF1, TRIM28, RBM39, KLF6, SNAI2, RCOR2, ESR1, OCA2, MED26, CTCF, TCF12, EP300, SOX5, GATA6, E2F6, DMAP1, FOXA3, ZNF175, GATAD2A, EHMT2, RBPJ, GTF2F1, PDX1, MLX, MYCN, HHEX, RUNX1T1, TOP2A, ZNF263, MTA2, ZBTB48, ZSCAN5A, GATAD1, DDX5, NBN, SAP130, ARID3A, TBP, HNF4G, ETS1, MYC, SMARCA4, RAD21, GRHL3, RXRA, NKX2-1, GABPA, STAT3, ZNF614, XRCC5, IKZF1, MIER3, HNRNPH1, NR2F6, RCOR1, VDR, NR3C1, CEBPB, CREB1, CCAR2, TBL1XR1, ZNF652, GABPB1, ZHX2, MIXL1, TFE3, HDAC2, GATA2, ZNF644, MXD3, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, BCL6, SMC1A, HDAC1, CEBPA, SOX13, ZFX, ERG3, SP5, SMARCC1, MYBL2, RARA, ZNF384, CDK6, GATA4, ARNT, ZNF48, SMAD4, FOS, HMGXB4, SMARCB1, MED1, TEAD3, ZEB1, SCRT2, ZMYM3, U2AF1, SMAD1, ZNF41, RBM22, BCL11A, SP1, NIPBL, HNF4A, ARID2, IKZF5, REST, ZBTB7A, ASH2L, FOXP1, SMC3, STAG1, ETV4, SKI, TRP47, PPARG, FOXA2, CREM, MIER2, WT1, FOXF1, ZBTB33, TCF7, HOXB13, ZKSCAN1, FOXO3, KDM1A, YY1, ZNF580, ZNF19, RELA, SP140, HIF1A, MAX, GATA1, MTA1, CBX2, CEBPG, NR2F2, ZNF512, NR2F1, NEUROG2, ZNF334, MYOD1, ELF3, PHF5A, KAT8, ARID4B, BHLHE40, NFKBIZ, AR, ZNF366, EGR1, ZBTB26, BRD4, JUND, SCRT1, CUX1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1,CFAP298-TCP10L,EVA1C,SCAF4,URB1,MIS18A,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
- Related loop:
chr21:22775000-22800000~~chr21:32575000-32600000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32300000-32325000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32475000-32500000~~chr21:32575000-32600000,