- Basic information
- CohesinDB ID: CDBP00417040
- Locus: chr21-32614942-32615265
-
Data sourse: GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 44%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): PAXBP1,SCAF4,CFAP298,MIS18A,SYNJ1,HUNK,CFAP298-TCP10L,URB1,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000142207,
ENSG00000166979,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:25725000-25750000~~chr21:32600000-32625000,
chr21:31700000-31725000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31850000-31875000~~chr21:32600000-32625000,
chr21:31975000-32000000~~chr21:32600000-32625000,
chr21:32075000-32100000~~chr21:32600000-32625000,
chr21:32275000-32300000~~chr21:32600000-32625000,
chr21:32300000-32325000~~chr21:32600000-32625000,
chr21:32350000-32375000~~chr21:32600000-32625000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32400000-32425000~~chr21:32600000-32625000,
chr21:32500000-32525000~~chr21:32600000-32625000,
chr21:32600000-32625000~~chr21:32725000-32750000,