- Basic information
- CohesinDB ID: CDBP00417041
- Locus: chr21-32618034-32618378
-
Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 55%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): URB1,EVA1C,SYNJ1,SCAF4,HUNK,MIS18A,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000142207,
ENSG00000166979,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:25725000-25750000~~chr21:32600000-32625000,
chr21:31700000-31725000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31850000-31875000~~chr21:32600000-32625000,
chr21:31975000-32000000~~chr21:32600000-32625000,
chr21:32075000-32100000~~chr21:32600000-32625000,
chr21:32275000-32300000~~chr21:32600000-32625000,
chr21:32300000-32325000~~chr21:32600000-32625000,
chr21:32350000-32375000~~chr21:32600000-32625000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32400000-32425000~~chr21:32600000-32625000,
chr21:32500000-32525000~~chr21:32600000-32625000,
chr21:32600000-32625000~~chr21:32725000-32750000,