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Basic information

CohesinDB ID: CDBP00417046

Locus: chr21-32626571-32626979

Data sourse: GSE206145-NatGen2015

Cell type: Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 52%, "5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, EBF1, ZFX, ZNF580, RELA, RUNX2, ZSCAN30, PBX4, GRHL3, ARNT, ZNF189, STAT3, MAX, ZNF8, SUPT5H, RCOR1, MED1, CEBPB, ETV1, ZMYM3, PIAS1, JUN, SPI1, BHLHE40, GATA2, RBM25, ZNF146, BRD4

Target gene symbol (double-evidenced CRMs): PAXBP1,SYNJ1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159082, ENSG00000159086,

eachgene

Deatailed information for cohesin site CDBP00417046